Session 1: Oral presentations and discussion | ||
09:00-09:25 | Overview of BioNLP Shared Task 2011 - Overall Organization, and GE, EPI and ID Tasks Shared Task Organizers | |
09:25-09:40 | Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction Andreas Vlachos and Mark Craven | |
09:40-09:55 | Event Extraction as Dependency Parsing for BioNLP 2011 < David McClosky, Mihai Surdeanu and Christopher Manning | |
09:55-10:10 | Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation Sebastian Riedel and Andrew McCallum | |
10:10-10:25 | Model Combination for Event Extraction in BioNLP 2011 Sebastian Riedel, David McClosky, Mihai Surdeanu, Andrew McCallum and Christopher D. Manning | |
10:25-10:30 | Discussion | |
10:30-11:00 | Morning break | |
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11:00-11:20 | Overview of BioNLP Shared Task 2011 - Bacteria Track (BB, BI) and Supporting Tasks (CO, REL and REN) | |
11:20-11:35 | The Taming of Reconcile as a Biomedical Coreference Resolver Youngjun Kim, Ellen Riloff and Nathan Gilbert | |
11:35-11:55 | Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution Nhung T. H. Nguyen and Yoshimasa Tsuruoka | |
11:55-12:15 | BioNLP 2011 Task Bacteria Biotope - The Alvis system Zorana Ratkovic, Wiktoria Golik, Pierre Warnier, Philippe Veber and Claire Nédellec | |
12:15-12:30 | Discussion | |
12:30-14:00 | Lunch break | |
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14:00-14:10 | Spotlight presentations | |
14:10-15:30 | Poster presentations | |
| BioNLP Shared Task 2011: Supporting Resources Pontus Stenetorp, Goran Topi ć , Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim and Jun'ichi Tsujii | |
| Sentence Filtering for BioNLP: Searching for Renaming Acts Pierre Warnier and Claire Nédellec | |
| Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features Liam R. McGrath, Kelly Domico, Courtney D. Corley and Bobbie-Jo Webb-Robertson | |
| Using Kybots for Extracting Events in Biomedical Texts Arantza Casillas, Arantza Díaz de Ilarraza, Koldo Gojenola, Maite Oronoz and German Rigau | |
| Extracting Biological Events from Text Using Simple Syntactic Patterns Quoc-Chinh Bui and Peter. M.A. Sloot | |
| Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction Sofie Van Landeghem, Thomas Abeel, Bernard De Baets and Yves Van de Peer | |
| A Pattern Approach for Biomedical Event Annotation Quang Le Minh, Son Nguyen Truong and Quoc Ho Bao | |
| An Incremental Model for the Coreference Resolution Task of BioNLP 2011 Don Tuggener, Manfred Klenner, Gerold Schneider, Simon Clematide and Fabio Rinaldi | |
| Double Layered Learning for Biological Event Extraction from Text Ehsan Emadzadeh, Azadeh Nikfarjam and Graciela Gonzalez | |
15:30-16:00 | Afternoon break | |
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16:00-16:20 | MSR-NLP Entry in BioNLP Shared Task 2011 Chris Quirk, Pallavi Choudhury, Michael Gamon and Lucy Vanderwende | |
16:20-16:40 | From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text Haibin Liu, Ravikumar Komandur and Karin Verspoor | |
16:40-16:55 | Adapting a General Semantic Interpretation Approach to Biological Event Extraction Halil Kilicoglu and Sabine Bergler | |
16:55-17:15 | Generalizing Biomedical Event Extraction Jari Björne and Tapio Salakoski | |
17:15-17:30 | Discussion | |
N L P Tasks
Natural Language Processing